Within level analysis
within_level.RdProcesses a single level within a condition, performing limma analysis and generating the top table of results.
Usage
within_level(
level,
level_index,
spline_params,
data,
rna_seq_data,
meta,
design,
condition,
feature_names,
padjust_method,
mode
)Arguments
- level
The level within the condition to process.
- level_index
The index of the level within the condition.
- spline_params
A list of spline parameters for the analysis.
- data
A matrix of data values.
- rna_seq_data
An object containing the preprocessed RNA-seq data, such as the output from `limma::voom` or a similar preprocessing pipeline.
- meta
A dataframe containing the metadata for data.
- design
A design formula or matrix for the limma analysis.
- condition
A character string specifying the condition.
- feature_names
A non-empty character vector of feature names.
- padjust_method
A character string specifying the p-adjustment method.
- mode
A character string specifying the mode ('isolated' or 'integrated').
See also
within_level, process_top_table