Process Combination
process_combo.RdProcesses a single combination of data, design, spline configuration, and p-threshold to generate LIMMA spline results.
Usage
process_combo(
data_index,
design_index,
spline_config_index,
pthreshold,
datas,
rna_seq_datas,
metas,
designs,
modes,
condition,
spline_test_configs,
feature_names,
padjust_method,
...
)Arguments
- data_index
Index of the data in the datas list.
- design_index
Index of the design in the designs list.
- spline_config_index
Index of the spline configuration in the spline_test_configs list.
- pthreshold
The p-value threshold for significance.
- datas
A list of data matrices
- rna_seq_datas
A list of RNA-seq data objects, such as the voom object derived from the limma::voom function.
- metas
A list of metadata corresponding to the data matrices.
- designs
A list of design matrices.
- modes
A character vector containing 'isolated' or 'integrated'.
- condition
A single character string specifying the condition.
- spline_test_configs
A configuration object for spline tests.
- feature_names
A character vector of feature names.
- padjust_method
A single character string specifying the p-adjustment method.
- ...
Additional arguments.