Manage GSEA Analysis for a Specific Level — manage_gsea

This function manages the GSEA analysis for a specific level. It extracts genes associated with the clustered hits, removes rows with `NA` values, and runs the GSEA analysis using the `create_gsea_report` function.

Usage

manage_gsea_level(
  clustered_hits,
  level_name,
  databases,
  clusterProfiler_params,
  universe
)

Arguments

clustered_hits: A dataframe containing the clustered hits for a specific level. It must include a column named `feature` to extract genes.
level_name: A character string representing the name of the level.
databases: A list of databases for the gene set enrichment analysis.
clusterProfiler_params: Additional parameters for the GSEA analysis, default is NA. Those include adj_p_value, pAdjustMethod, etc (see clusterProfiler documentation).
universe: Enrichment background data, default is NULL.

Value

The result of the `create_gsea_report` function, which typically includes various plots and enrichment results.